Zeolites are widely used as adsorbents due to their porous structure and ion-exchange capabilities. However, their adsorption efficiency for heavy metal ions remains limited. To enhance their performance, the natural zeolite heulandite (Z) was functionalized with guanidine derivatives: N-[3-(triethoxysilyl)propyl]guanidine (1), -aminoguanidine (2), and -acetyl-guanidine (3). The resulting materials (Z1–Z3) were evaluated for their ability to adsorb Co2+, Cu2+, and Ni2+ from aqueous solutions. The composition and structure of silanes 1–3 were confirmed by FT-IR and 1H and 13C NMR spectroscopy methods. The modified zeolites were characterized using nitrogen adsorption/desorption (BET) and SEM-EDX to confirm their functionalization and assess the structural changes. A TGA-DSC was used to determine the thermal stability. The adsorption experiments were conducted in single and multi-ionic aqueous solutions at pH 5.0 to evaluate metal uptake. Functionalization significantly improved the adsorption efficiency, with Z1–Z3 showing a three to six times greater adsorption capacity than the unmodified zeolite. The adsorption efficiency followed the trend Cu2+ > Co2+ > Ni2+, primarily due to chelate complex formation between the metal ions and guanidine groups. The SEM-EDX confirmed the co-localization of nitrogen atoms and metal ions. The functional materials (Z1–Z3) exhibited strong potential as adsorbents for noble, heavy, and toxic metal ions, and could find applications in industry, agriculture, ecology, medicine, chemistry, wastewater treatment, soil remediation, chemisorption, filtration, chromatography, etc. © 2025 Elsevier B.V., All rights reserved.